Elif Sarinay Cenik

View  Publications on PubMed

Selected publications:

1. Surya A, Bolton BM, Rothe R, Mejia-Trujillo R, Zhao Q, Leonita A, Liu Y, Rangan R, Gorusu Y, Nguyen P, Can Cenik C, Sarinay Cenik E. Cytosolic Ribosomal Protein Haploinsufficiency affects Mitochondrial Morphology and Respiration. bioRxiv (2024) 2024.04.16.589775. Article link

   NOTE: You can find the raw datasets for this manuscript in the following Texas Data Repository link

2. Al-Refaie N., Padovani F., Binando F., Hornung J., Zhao Q., Towbin B.D., Cenik E.S., Stroustrup N., Schmoller K.M., Cabianca D.S. An mTOR/RNA pol I axis shapes chromatin architecture in response to fasting. bioRxiv (2023) 07.22.550032, Article link
3. Zhao, Q., Rangan, R., Weng, S., Ozdemir, C. , Cenik, E. S. Inhibition of ribosome biogenesis in the epidermis is sufficient to trigger organism-wide growth quiescence independently of nutritional status in C. elegans (2023). PLOS Biology. Article link

4. Freeman, TF. Zhao, Q., Surya A, Rothe R, Cenik E. S. Ribosome biogenesis disruption mediated chromatin structure changes revealed by SRAtac, a customizable end to end analysis pipeline for ATAC-seq (2023). BMC Genomics, 10.1186/s12864-023-09576-y. Article link

   NOTE: You can find the SRAtac tool, an end-to-end customizable analysis pipeline for alignment and ATAC-seq analysis across different model organisms, at the following GitHub repositories: https://github.com/trev-f/SRAlign, https://github.com/trev-f/SRAtac

5. Surya, A. & Cenik, E.S. Cell autonomous and non-autonomous consequences of deviations in translation machinery on organism growth and the connecting signalling pathways (2022) Open Biology April 27; 12: 210308. Review article link
6. Panici, B., Nakajima, H., Carlston, C. M., Ozadam, H., Cenik, C., Cenik, E. S. (2021). Loss of coordinated expression between ribosomal and mitochondrial genes revealed by comprehensive characterization of a large family with a rare Mendelian disorder (2021). Genomics. July; 113(4):1895-1905. Article link
7. Rao, S, Hoskins, I, Garcia, D, Tonn, T, Ozadam, H, Cenik, E.S, Cenik, C (2021). Genes with 5’terminal oligopyrimidine tracts preferentially escape global suppression of translation by the SARS-CoV-2 NSP1 protein (2021). RNA. Jun 14. 2021 Recipient of the RNA Journal Prize. Article link
8. Byeon, GW, Cenik, ES, Jiang, L, Tang, H, Das, R, & Barna, M. (2021). Functional and structural basis of extreme non-coding conservation in vertebrate mRNAs (2021). Nature Genetics, highlighted in the same issue with News & Views by Gupta & Beaudoin. Article link

9. Cenik ES, Meng X, Tang NH ,Hall RN, Arribere JA, Cenik C, Jin Y, Fire AZ (2019). Maternal ribosomes are sufficient for tissue diversification during embryonic development in C. elegans. Developmental Cell, Mar25;48(6), 811-826.e6. Featured in Faculty of 1000. Article link

   Highlighted in the same issue with a preview by Haag & Dinman, 2019, Link

10. Arribere, JA, Cenik ES, Jain N, Hess G, Lee C, Bassik MC, Fire AF. (2016). Translation Readthrough Mitigation. Nature, Jun 1;534(7609):719-723. Article link
11. Cenik C, Cenik ES, Byeon GW, Grubert F, Candille S, Spacek D, Alsallakh B, Tilgner H, Araya CL, Tang H, Ricci E, Snyder MP. (2015). Integrative analysis of RNA, translation, and protein levels reveals distinct regulatory variation across humans. Genome Research, Nov;25(11):1610-21. Article link
12. Cenik, ES, & Zamore, PD (2011). Argonaute proteins. Current Biology, 21(12), R446-9. Review Article link
13. Cenik, ES, Fukunaga, R, Lu, G, Dutcher, R, Wang, Y, Tanaka Hall, TM, Zamore, PD (2011). Phosphate and R2D2 restrict the substrate specificity of Dicer-2, an ATP-driven ribonuclease. Molecular Cell, 42(2), 172-184. Featured in Faculty of 1000. Article link